Dr Jason Dowling
Adjunct Associate Professor
School of Electrical Engineering & Computer Science
Book Chapters
Dowling, Jason, O'Connor, Laura, Acosta, Oscar, Raniga, Parnesh, de Crevoisier, Renaud, Nunes, Jean-Claude, Barateau, Anais, Chourak, Hilda, Choi, Jae Hyuk and Greer, Peter (2022). Image synthesis for MRI-only radiotherapy treatment planning. Biomedical image synthesis and simulation: methods and applications. (pp. 423-445) edited by Ninon Burgos and David Svoboda. London, United Kingdom: Academic Press/Elsevier. doi: 10.1016/B978-0-12-824349-7.00027-X
Dowling, Jason A. and Korhonen, Juha (2019). MR-Only Methodology. MRI for Radiotherapy: Planning, Delivery, and Response Assessment. (pp. 131-151) Cham, Switzerland: Springer. doi: 10.1007/978-3-030-14442-5_9
Acosta, Oscar, Dowling, Jason, Drean, Gael, Simon, Antoine, De Crevoisier, Renaud and Haigron, Pascal (2014). Multi-atlas-based segmentation of pelvic structures from ct scans for planning in prostate cancer radiotherapy. Abdomen and Thoracic Imaging: An Engineering and Clinical Perspective. (pp. 623-656) Boston, MA: Springer US. doi: 10.1007/978-1-4614-8498-1_24
Dowling, Jason, Boles, Wageeh and Maeder, Anthony (2008). Visual prostheses for the blind: A framework for information presentation. Mechatronics and Machine Vision in Practice. (pp. 275-287) Springer Berlin Heidelberg. doi: 10.1007/978-3-540-74027-8_24
Journal Articles
Han, Songyue, Hémon, Cédric, Texier, Blanche, Kortli, Yassin, Queffelec, Adélie, de Crevoisier, Renaud, Dowling, Jason, Greer, Peter, Bessières, Igor, Barateau, Anaïs, Lafond, Caroline and Nunes, Jean-Claude (2025). Balancing data consistency and diversity: Preprocessing and online data augmentation for multi-center deep learning-based MR-to-CT synthesis. Pattern Recognition Letters, 189, 56-63. doi: 10.1016/j.patrec.2025.01.002
Mehawed, Georges, Roberts, Matthew J., Bugeja, Jessica, Dowling, Jason, Stewart, Kate, Gunasena, Rivindi, Malczewski, Frances, Rukin, Nicholas J. and Murray, Rebecca (2024). A pilot study of PSMA PET/CT and MRI fusion for prostate cancer: Software to replace PET/MRI hardware. Journal of Clinical Medicine, 13 (23) 7384, 1-11. doi: 10.3390/jcm13237384
Lye, Ridhwan, Min, Hang, Dowling, Jason, Obertová, Zuzana, Estai, Mohamed, Bachtiar, Nur Amelia and Franklin, Daniel (2024). Deep learning versus human assessors: forensic sex estimation from three-dimensional computed tomography scans. Scientific Reports, 14 (1) 30136, 1-12. doi: 10.1038/s41598-024-81718-y
Nicolson, Aaron, Dowling, Jason, Anderson, Doug and Koopman, Bevan (2024). Longitudinal data and a semantic similarity reward for chest X-ray report generation. Informatics in Medicine Unlocked, 50 101585, 101585. doi: 10.1016/j.imu.2024.101585
Chlap, Phillip, Min, Hang, Dowling, Jason, Field, Matthew, Cloak, Kirrily, Leong, Trevor, Lee, Mark, Chu, Julie, Tan, Jennifer, Tran, Phillip, Kron, Tomas, Sidhom, Mark, Wiltshire, Kirsty, Keats, Sarah, Kneebone, Andrew, Haworth, Annette, Ebert, Martin A., Vinod, Shalini K. and Holloway, Lois (2024). Uncertainty estimation using a 3D probabilistic U-Net for segmentation with small radiotherapy clinical trial datasets. Computerized Medical Imaging and Graphics, 116 102403, 1-17. doi: 10.1016/j.compmedimag.2024.102403
Texier, Blanche, Hémon, Cédric, Queffélec, Adélie, Dowling, Jason, Bessieres, Igor, Greer, Peter, Acosta, Oscar, Boue-Rafle, Adrien, de Crevoisier, Renaud, Lafond, Caroline, Castelli, Joël, Barateau, Anaïs and Nunes, Jean-Claude (2024). 3D Unsupervised deep learning method for magnetic resonance imaging-to-computed tomography synthesis in prostate radiotherapy. Physics and Imaging in Radiation Oncology, 31 100612, 100612-31. doi: 10.1016/j.phro.2024.100612
Leung, Sze-Nung, Chandra, Shekhar S., Lim, Karen, Young, Tony, Holloway, Lois and Dowling, Jason A. (2024). Automatic segmentation of tumour and organs at risk in 3D MRI for cervical cancer radiation therapy with anatomical variations. Physical and Engineering Sciences in Medicine, 47 (3), 1-10. doi: 10.1007/s13246-024-01415-y
Le Bao, Viet, Haworth, Annette, Dowling, Jason A., Walker, Amy, Arumugam, Sankar, Jameson, Michael, Chlap, Phillip, Wiltshire, Kirsty, Keats, Sarah, Cloak, Kirrily, Sidhom, Mark, Kneebone, Andrew and Holloway, Lois (2024). Evaluating the relationship between contouring variability and modelled treatment outcome for prostate bed radiotherapy. Physics in Medicine and Biology, 69 (8) 085008, 1-15. doi: 10.1088/1361-6560/ad3325
Vukovic, Damjan, Wang, Andrew, Antico, Maria, Steffens, Marian, Ruvinov, Igor, van Sloun, Ruud J. G., Canty, David, Royse, Alistair, Royse, Colin, Haji, Kavi, Dowling, Jason, Chetty, Girija and Fontanarosa, Davide (2023). Automatic deep learning-based pleural effusion segmentation in lung ultrasound images. BMC Medical Informatics and Decision Making, 23 (1) 274, 1-14. doi: 10.1186/s12911-023-02362-6
Tahri, Safaa, Texier, Blanche, Nunes, Jean-Claude, Hemon, Cédric, Lekieffre, Pauline, Collot, Emma, Chourak, Hilda, Le Guevelou, Jennifer, Greer, Peter, Dowling, Jason, Acosta, Oscar, Bessieres, Igor, Marage, Louis, Boue-Rafle, Adrien, De Crevoisier, Renaud, Lafond, Caroline and Barateau, Anaïs (2023). A deep learning model to generate synthetic CT for prostate MR-only radiotherapy dose planning: a multicenter study. Frontiers in Oncology, 13 1279750, 1-12. doi: 10.3389/fonc.2023.1279750
Bugeja, Jessica M., Mehawed, Georges, Roberts, Matthew J., Rukin, Nicholas, Dowling, Jason and Murray, Rebecca (2023). Prostate volume analysis in image registration for prostate cancer care: a verification study. Physical and Engineering Sciences in Medicine, 46 (4), 1-12. doi: 10.1007/s13246-023-01342-4
Chourak, Hilda, Barateau, Anaïs, Greer, Peter, Lafond, Caroline, Nunes, Jean-Claude, de Crevoisier, Renaud, Dowling, Jason and Acosta, Oscar (2023). Determination of acceptable Hounsfield units uncertainties via a sensitivity analysis for an accurate dose calculation in the context of prostate MRI-only radiotherapy. Physical and Engineering Sciences in Medicine, 46 (4), 1703-1711. doi: 10.1007/s13246-023-01333-5
Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2023). Improving chest X-ray report generation by leveraging warm starting. Artificial Intelligence in Medicine, 144 102633, 1-17. doi: 10.1016/j.artmed.2023.102633
Texier, Blanche, Hémon, Cédric, Lekieffre, Pauline, Collot, Emma, Tahri, Safaa, Chourak, Hilda, Dowling, Jason, Greer, Peter, Bessieres, Igor, Acosta, Oscar, Boue-Rafle, Adrien, Guevelou, Jennifer Le, de Crevoisier, Renaud, Lafond, Caroline, Castelli, Joël, Barateau, Anaïs and Nunes, Jean-Claude (2023). Computed tomography synthesis from magnetic resonance imaging using cycle Generative Adversarial Networks with multicenter learning. Physics and Imaging in Radiation Oncology, 28 100511, 1-7. doi: 10.1016/j.phro.2023.100511
Min, Hang, Dowling, Jason, Jameson, Michael G., Cloak, Kirrily, Faustino, Joselle, Sidhom, Mark, Martin, Jarad, Cardoso, Michael, Ebert, Martin A., Haworth, Annette, Chlap, Phillip, de Leon, Jeremiah, Berry, Megan, Pryor, David, Greer, Peter, Vinod, Shalini K. and Holloway, Lois (2023). Clinical target volume delineation quality assurance for MRI-guided prostate radiotherapy using deep learning with uncertainty estimation. Radiotherapy and Oncology, 186 109794, 1-6. doi: 10.1016/j.radonc.2023.109794
Young, Tony, Dowling, Jason, Rai, Robba, Liney, Gary, Greer, Peter, Thwaites, David and Holloway, Lois (2023). Clinical validation of MR imaging time reduction for substitute/synthetic CT generation for prostate MRI-only treatment planning. Physical and Engineering Sciences in Medicine, 46 (3), 1015-1021. doi: 10.1007/s13246-023-01268-x
O'Connor, Laura M., Quinn, Alesha, Denley, Samuel, Leigh, Lucy, Martin, Jarad, Dowling, Jason A., Skehan, Kate, Warren-Forward, Helen and Greer, Peter B. (2023). Cone beam computed tomography image guidance within a magnetic resonance imaging-only planning workflow. Physics and Imaging in Radiation Oncology, 27 100472, 1-6. doi: 10.1016/j.phro.2023.100472
Chin, V., Finnegan, R. N., Chlap, P., Otton, J., Haidar, A., Holloway, L., Thwaites, D. I., Dowling, J., Delaney, G. P. and Vinod, S.K. (2023). Validation of a fully automated hybrid deep learning cardiac substructure segmentation tool for contouring and dose evaluation in lung cancer radiotherapy. Clinical Oncology, 35 (6), 370-381. doi: 10.1016/j.clon.2023.03.005
Min, Hang, Rabi, Yousef, Wadhawan, Ashish, Bourgeat, Pierrick, Dowling, Jason, White, Jordy, Tchernegovski, Ayden, Formanek, Blake, Schuetz, Michael, Mitchell, Gary, Williamson, Frances, Hacking, Craig, Tetsworth, Kevin and Schmutz, Beat (2023). Automatic classification of distal radius fracture using a two-stage ensemble deep learning framework. Physical and Engineering Sciences in Medicine, 46 (2), 877-886. doi: 10.1007/s13246-023-01261-4
Finnegan, Robert N., Chin, Vicky, Chlap, Phillip, Haidar, Ali, Otton, James, Dowling, Jason, Thwaites, David I., Vinod, Shalini K., Delaney, Geoff P. and Holloway, Lois (2023). Open-source, fully-automated hybrid cardiac substructure segmentation: development and optimisation. Physical and Engineering Sciences in Medicine, 46 (1), 377-393. doi: 10.1007/s13246-023-01231-w
Hyuk Choi, Jae, Asadi, Behzad, Simpson, John, Dowling, Jason A., Chalup, Stephan, Welsh, James and Greer, Peter (2023). Investigation of a water equivalent depth method for dosimetric accuracy evaluation of synthetic CT. Physica Medica, 105 102507. doi: 10.1016/j.ejmp.2022.11.011
Durrani, Nabeel, Vukovic, Damjan, van der Burgt, Jeroen, Antico, Maria, van Sloun, Ruud J. G., Canty, David, Steffens, Marian, Wang, Andrew, Royse, Alistair, Royse, Colin, Haji, Kavi, Dowling, Jason, Chetty, Girija and Fontanarosa, Davide (2022). Automatic deep learning-based consolidation/collapse classification in lung ultrasound images for COVID-19 induced pneumonia. Scientific Reports, 12 (1) 17581, 1-15. doi: 10.1038/s41598-022-22196-y
Tahri, S., Barateau, A., Cadin, C., Chourak, H., Ribault, S., Nozahic, F., Acosta, O., Dowling, J.A., Greer, P.B., Largent, A., Lafond, C., De Crevoisier, R. and Nunes, J.C. (2022). A high-performance method of deep learning for prostate MR-only radiotherapy planning using an optimized Pix2Pix architecture. Physica Medica, 103, 108-118. doi: 10.1016/j.ejmp.2022.10.003
Chourak, Hilda, Barateau, Anaïs, Tahri, Safaa, Cadin, Capucine, Lafond, Caroline, Nunes, Jean-Claude, Boue-Rafle, Adrien, Perazzi, Mathias, Greer, Peter B., Dowling, Jason, de Crevoisier, Renaud and Acosta, Oscar (2022). Quality assurance for MRI-only radiation therapy: A voxel-wise population-based methodology for image and dose assessment of synthetic CT generation methods. Frontiers in Oncology, 12 968689, 1-17. doi: 10.3389/fonc.2022.968689
Terhorst, Andrew and Dowling, Jason A. (2022). Terrestrial analogue research to support human performance on Mars: a review and bibliographic analysis. Space: Science and Technology, 2022 9841785, 1-18. doi: 10.34133/2022/9841785
Dai, Wei, Woo, Boyeong, Liu, Siyu, Marques, Matthew, Engstrom, Craig, Greer, Peter B., Crozier, Stuart, Dowling, Jason A. and Chandra, Shekhar S. (2022). CAN3D: Fast 3D medical image segmentation via compact context aggregation. Medical Image Analysis, 82 102562, 1-17. doi: 10.1016/j.media.2022.102562
O’Connor, Laura M., Dowling, Jason A., Choi, Jae Hyuk, Martin, Jarad, Warren-Forward, Helen, Richardson, Haylea, Best, Leah, Skehan, Kate, Kumar, Mahesh, Govindarajulu, Geetha, Sridharan, Swetha and Greer, Peter B. (2022). Validation of an MRI-only planning workflow for definitive pelvic radiotherapy. Radiation Oncology, 17 (1) 55, 1-11. doi: 10.1186/s13014-022-02023-4
Richardson, Haylea, Kumar, Mahesh, Tieu, Minh Thi, Parker, Joel, Dowling, Jason A., Arm, Jameen, Best, Leah, Greer, Peter B., Clapham, Matthew, Oldmeadow, Christopher, O’Connor, Laura and Wratten, Chris (2022). Assessing the impact of magnetic resonance treatment simulation (MRSIM) on target volume delineation and dose to organs at risk for oropharyngeal radiotherapy. Journal of Medical Radiation Sciences, 69 (1), 66-74. doi: 10.1002/jmrs.552
Ebert, Martin A., Marcello, Marco, Kennedy, Angel, Haworth, Annette, Holloway, Lois C., Greer, Peter, Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Sydes, Matthew R., Hall, Emma and Dearnaley, David P. (2022). In Regard to Shortall et al. International Journal of Radiation: Oncology - Biology - Physics, 112 (3), 831-833. doi: 10.1016/j.ijrobp.2021.10.140
O’Connor, Laura M., Choi, Jae H., Dowling, Jason A., Warren-Forward, Helen, Martin, Jarad and Greer, Peter B. (2022). Comparison of Synthetic Computed Tomography Generation Methods, Incorporating Male and Female Anatomical Differences, for Magnetic Resonance Imaging-Only Definitive Pelvic Radiotherapy. Frontiers in Oncology, 12 822687, 1-10. doi: 10.3389/fonc.2022.822687
Gillman, Ashley G., Lunardo, Febrio, Prinable, Joseph, Belous, Gregg, Nicolson, Aaron, Min, Hang, Terhorst, Andrew and Dowling, Jason A. (2022). Automated COVID-19 diagnosis and prognosis with medical imaging and who is publishing: a systematic review. Physical and Engineering Sciences in Medicine, 45 (1), 13-29. doi: 10.1007/s13246-021-01093-0
Finnegan, Robert N., Reynolds, Hayley M., Ebert, Martin A., Sun, Yu, Holloway, Lois, Sykes, Jonathan R., Dowling, Jason, Mitchell, Catherine, Williams, Scott G., Murphy, Declan G. and Haworth, Annette (2022). A statistical, voxelised model of prostate cancer for biologically optimised radiotherapy. Physics and Imaging in Radiation Oncology, 21, 136-145. doi: 10.1016/j.phro.2022.02.011
Pang, Shuchao, Field, Matthew, Dowling, Jason, Vinod, Shalini, Holloway, Lois and Sowmya, Arcot (2022). Training radiomics-based CNNs for clinical outcome prediction: challenges, strategies and findings. Artificial Intelligence in Medicine, 123 102230, 1-11. doi: 10.1016/j.artmed.2021.102230
O'Connor, Laura M., Skehan, Kate, Choi, Jae H., Simpson, John, Martin, Jarad, Warren-Forward, Helen, Dowling, Jason and Greer, Peter (2021). Optimisation and validation of an integrated magnetic resonance imaging-only radiotherapy planning solution. Physics and Imaging in Radiation Oncology, 20, 34-39. doi: 10.1016/j.phro.2021.10.001
Min, Hang, Dowling, Jason, Jameson, Michael G, Cloak, Kirrily, Faustino, Joselle, Sidhom, Mark, Martin, Jarad, Ebert, Martin A, Haworth, Annette, Chlap, Phillip, de Leon, Jeremiah, Berry, Megan, Pryor, David, Greer, Peter, Vinod, Shalini K and Holloway, Lois (2021). Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial. Physics in Medicine and Biology, 66 (19) 195008, 195008. doi: 10.1088/1361-6560/ac25d5
Samarasinghe, Gihan, Jameson, Michael, Vinod, Shalini, Field, Matthew, Dowling, Jason, Sowmya, Arcot and Holloway, Lois (2021). Deep learning for segmentation in radiation therapy planning: a review. Journal of Medical Imaging and Radiation Oncology, 65 (5), 578-595. doi: 10.1111/1754-9485.13286
Young, Tony, Dowling, Jason, Rai, Robba, Liney, Gary, Greer, Peter, Thwaites, David and Holloway, Lois (2021). Effects of MR imaging time reduction on substitute CT generation for prostate MRI-only treatment planning. Physical and Engineering Sciences in Medicine, 44 (3), 799-807. doi: 10.1007/s13246-021-01031-0
Chlap, Phillip, Min, Hang, Vandenberg, Nym, Dowling, Jason, Holloway, Lois and Haworth, Annette (2021). A review of medical image data augmentation techniques for deep learning applications. Journal of Medical Imaging and Radiation Oncology, 65 (5), 545-563. doi: 10.1111/1754-9485.13261
Tsai, Chung-Han, van der Burgt, Jeroen, Vukovic, Damjan, Kaur, Nancy, Demi, Libertario, Canty, David, Wang, Andrew, Royse, Alistair, Royse, Colin, Haji, Kavi, Dowling, Jason, Chetty, Girija and Fontanarosa, Davide (2021). Automatic deep learning-based pleural effusion classification in lung ultrasound images for respiratory pathology diagnosis. Physica Medica, 83, 38-45. doi: 10.1016/j.ejmp.2021.02.023
Finnegan, Robert, Laugaard Lorenzen, Ebbe, Dowling, Jason, Thwaites, David, Delaney, Geoff, Brink, Carsten and Holloway, Lois (2021). Validation of a new open-source method for automatic delineation and dose assessment of the heart and LADCA in breast radiotherapy with simultaneous uncertainty estimation. Physics in Medicine & Biology, 66 (3) 035014, 035014. doi: 10.1088/1361-6560/abcb1d
Finnegan, Robert Neil, Orlandini, Lucia, Liao, Xiongfei, Yin, Jun, Lang, Jinyi, Dowling, Jason and Fontanarosa, Davide (2021). Feasibility of using a novel automatic cardiac segmentation algorithm in the clinical routine of lung cancer patients. PLoS One, 16 (1) e0245364, 1-14. doi: 10.1371/journal.pone.0245364
Ghandourh, Wsam, Dowling, Jason, Chlap, Phillip, Oar, Andrew, Jacob, Susannah, Batumalai, Vikneswary and Holloway, Lois (2021). Assessing tumor centrality in lung stereotactic ablative body radiotherapy (SABR): the effects of variations in bronchial tree delineation and potential for automated methods. Medical Dosimetry, 46 (1), 94-101. doi: 10.1016/j.meddos.2020.09.004
Buckley, Jarryd G., Smith, Allan “Ben”, Sidhom, Mark, Rai, Robba, Liney, Gary P., Dowling, Jason A., Metcalfe, Peter E., Holloway, Lois C. and Keall, Paul J. (2020). Measurements of human tolerance to horizontal rotation within an MRI scanner: towards gantry‐free radiation therapy. Journal of Medical Imaging and Radiation Oncology, 65 (1), 112-119. doi: 10.1111/1754-9485.13130
Dowling, Jason A. and O’Connor, Laura M. (2020). Deformable image registration in radiation therapy. Journal of Medical Radiation Sciences, 67 (4), 257-259. doi: 10.1002/jmrs.446
Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Matthew R., Hall, Emma and Ebert, Martin A. (2020). Reduced dose posterior to prostate correlates with increased PSA progression in voxel-based analysis of 3 randomized phase 3 trials. International Journal of Radiation Oncology*Biology*Physics, 108 (5), 1304-1318. doi: 10.1016/j.ijrobp.2020.07.030
Finnegan, Robert, Lorenzen, Ebbe Laugaard, Dowling, Jason, Jensen, Ingelise, Berg, Martin, Thomsen, Mette Skovhus, Delaney, Geoff P., Koh, Eng-Siew, Thwaites, David, Brink, Carsten, Offersen, Birgitte Vrou and Holloway, Lois (2020). Analysis of cardiac substructure dose in a large, multi-centre danish breast cancer cohort (the DBCG HYPO trial): Trends and predictive modelling. Radiotherapy and Oncology, 153, 130-138. doi: 10.1016/j.radonc.2020.09.004
Buckley, J. G., Dowling, J. A., Sidhom, M., Liney, G. P., Rai, R., Metcalfe, P. E., Holloway, L. C. and Keall, P. J. (2020). Pelvic organ motion and dosimetric implications during horizontal patient rotation for prostate radiation therapy. Medical Physics, 48 (1), 397-413. doi: 10.1002/mp.14579
Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Mathew R., Hall, Emma and Ebert, Martin A. (2020). Relationships between rectal and perirectal doses and rectal bleeding or tenesmus in pooled voxel-based analysis of 3 randomised phase III trials. Radiotherapy and Oncology, 150, 281-292. doi: 10.1016/j.radonc.2020.07.048
Zhang, Shichuan, Yang, Shuang, Xu, Peng, Xu, Yun, Zhou, Guanqun, Ou, Xiaomin, Wu, Runye, Lan, Mei, Fontanarosa, Davide, Dowling, Jason, Wang, Xiaoshen, Lin, Shaojun, Yi, Jun-Lin, Sun, Ying, Hu, Chaosu and Lang, Jinyi (2020). Variations of Clinical Target Volume Delineation for Primary Site of Nasopharyngeal Cancer Among Five Centers in China. Frontiers in Oncology, 10 1572. doi: 10.3389/fonc.2020.01572
Gholizadeh, Neda, Simpson, John, Ramadan, Saadallah, Denham, Jim, Lau, Peter, Siddique, Sabbir, Dowling, Jason, Welsh, James, Chalup, Stephan and Greer, Peter B. (2020). Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI. Journal of Applied Clinical Medical Physics, 21 (10), 179-191. doi: 10.1002/acm2.12992
Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Matthew R., Hall, Emma and Ebert, Martin A. (2020). Increased Dose to Organs in Urinary Tract Associates With Measures of Genitourinary Toxicity in Pooled Voxel-Based Analysis of 3 Randomized Phase III Trials. Frontiers in Oncology, 10 1174. doi: 10.3389/fonc.2020.01174
Finnegan, Robert, Lorenzen, Ebbe, Dowling, Jason, Holloway, Lois, Thwaites, David and Brink, Carsten (2020). Localised delineation uncertainty for iterative atlas selection in automatic cardiac segmentation. Physics in Medicine and Biology, 65 (3) 035011. doi: 10.1088/1361-6560/ab652a
Largent, Axel, Barateau, Anaïs, Nunes, Jean-Claude, Mylona, Eugenia, Castelli, Joël, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., Baxter, John, Saint-Jalmes, Hervé, Acosta, Oscar and de Crevoisier, Renaud (2019). Comparison of deep learning-based and patch-based methods for pseudo-CT generation in MRI-based prostate dose planning. International Journal of Radiation Oncology Biology Physics, 105 (5), 1137-1150. doi: 10.1016/j.ijrobp.2019.08.049
Choi, Jae Hyuk, Lee, Danny, O'Connor, Laura, Chalup, Stephan, Welsh, James S., Dowling, Jason and Greer, Peter B. (2019). Bulk anatomical density based dose calculation for patient-specific quality assurance of MRI-only prostate radiotherapy. Frontiers in Oncology, 9 997. doi: 10.3389/fonc.2019.00997
Dowling, Jason, Rosenfeld, Anatoly, Waldie, James and Feain, Ilana (2019). Opportunities in space life sciences. Australasian Physical and Engineering Sciences in Medicine, 42 (3), 663-664. doi: 10.1007/s13246-019-00769-y
Buckley, J. G., Rai, R., Liney, G. P., Dowling, J. A., Holloway, L. C., Metcalfe, P. E. and Keall, P. J. (2019). Anatomical deformation due to horizontal rotation: Towards gantry-free radiation therapy. Physics in Medicine and Biology, 64 (17) 175014. doi: 10.1088/1361-6560/ab324c
Kennedy, Angel, Dowling, Jason, Greer, Peter B, Holloway, Lois, Jameson, Michael G, Roach, Dale, Ghose, Soumya, Rivest-Hénault, David, Marcello, Marco and Ebert, Martin A (2019). Similarity clustering-based atlas selection for pelvic CT image segmentation. Medical Physics, 46 (5), 2243-2250. doi: 10.1002/mp.13494
Finnegan, Robert, Dowling, Jason, Koh, Eng-Siew, Tang, Simon, Otton, James, Delaney, Geoff, Batumalai, Vikneswary, Luo, Carol, Atluri, Pramukh, Satchithanandha, Athiththa, Thwaites, David and Holloway, Lois (2019). Feasibility of multi-atlas cardiac segmentation from thoracic planning CT in a probabilistic framework. Physics in Medicine and Biology, 64 (8) 085006. doi: 10.1088/1361-6560/ab0ea6
De Leon, Jeremiah, Jameson, Michael G., Rivest-Henault, David, Keats, Sarah, Rai, Robba, Arumugam, Sankar, Wilton, Lee, Ngo, Diana, Liney, Gary, Moses, Daniel, Dowling, Jason, Martin, Jarad and Sidhom, Mark (2019). Reduced motion and improved rectal dosimetry through endorectal immobilization for prostate stereotactic body radiotherapy. British Journal of Radiology, 92 (1098) 20190056, 20190056. doi: 10.1259/bjr.20190056
Veera, Jacqueline, Lim, Karen, Dowling, Jason A., O'Connor, Chelsie, Holloway, Lois C. and Vinod, Shalini K. (2019). Dedicated MRI simulation for cervical cancer radiation treatment planning: Assessing the impact on clinical target volume delineation. Journal of Medical Imaging and Radiation Oncology, 63 (2), 236-243. doi: 10.1111/1754-9485.12831
Largent, Axel, Barateau, Anaïs, Nunes, Jean-Claude, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., Saint-Jalmes, Hervé, Acosta, Oscar and de Crevoisier, Renaud (2019). Pseudo-CT generation for MRI-only radiation therapy treatment planning: comparison among patch-based, atlas-based, and bulk density methods. International Journal of Radiation Oncology Biology Physics, 103 (2), 479-490. doi: 10.1016/j.ijrobp.2018.10.002
Roach, Dale, Holloway, Lois C, Jameson, Michael G, Dowling, Jason A, Kennedy, Angel, Greer, Peter B, Krawiec, Michele, Rai, Robba, Denham, Jim, De Leon, Jeremiah, Lim, Karen, Berry, Megan E, White, Rohen T, Bydder, Sean A, Tan, Hendrick T, Croker, Jeremy D, McGrath, Alycea, Matthews, John, Smeenk, Robert J and Ebert, Martin A (2019). Multi-observer contouring of male pelvic anatomy: highly variable agreement across conventional and emerging structures of interest. Journal of Medical Imaging and Radiation Oncology, 63 (2), 264-271. doi: 10.1111/1754-9485.12844
Martin, Jarad, Keall, Paul, Siva, Shankar, Greer, Peter, Christie, David, Moore, Kevin, Dowling, Jason, Pryor, David, Chong, Peter, McLeod, Nicholas, Raman, Avi, Lynam, James, Smart, Joanne, Oldmeadow, Christopher, Tang, Colin I., Murphy, Declan G., Millar, Jeremy, Tai, Keen Hun, Holloway, Lois, Reeves, Penny, Hayden, Amy, Lim, Tee, Holt, Tanya and Sidhom, Mark (2019). TROG 18.01 phase III randomised clinical trial of the Novel Integration of New prostate radiation schedules with adJuvant Androgen deprivation: NINJA study protocol. BMJ Open, 9 (8) e030731, e030731. doi: 10.1136/bmjopen-2019-030731
Greer, Peter, Martin, Jarad, Sidhom, Mark, Hunter, Perry, Pichler, Peter, Choi, Jae Hyuk, Best, Leah, Smart, Joanne, Young, Tony, Jameson, Michael, Afinidad, Tess, Wratten, Chris, Denham, James, Holloway, Lois, Sridharan, Swetha, Rai, Robba, Liney, Gary, Raniga, Parnesh and Dowling, Jason (2019). A multi-center prospective study for implementation of an MRI-only prostate treatment planning workflow. Frontiers in Oncology, 9 (AUG) 826. doi: 10.3389/fonc.2019.00826
Gholizadeh, Neda, Greer, Peter B., Simpson, John, Denham, Jim, Lau, Peter, Dowling, Jason, Hondermarck, Hubert and Ramadan, Saadallah (2019). Characterization of prostate cancer using diffusion tensor imaging: A new perspective. European Journal of Radiology, 110, 112-120. doi: 10.1016/j.ejrad.2018.11.026
Arabi, Hossein, Dowling, Jason A., Burgos, Ninon, Han, Xiao, Greer, Peter B., Koutsouvelis, Nikolaos and Zaidi, Habib (2018). Comparative study of algorithms for synthetic CT generation from MRI: Consequences for MRI-guided radiation planning in the pelvic region. Medical Physics, 45 (11), 5218-5233. doi: 10.1002/mp.13187
Kennedy, Angel, Dowling, Jason, Greer, Peter B. and Ebert, Martin A. (2018). Estimation of Hounsfield unit conversion parameters for pelvic CT images. Australasian Physical and Engineering Sciences in Medicine, 41 (3), 739-745. doi: 10.1007/s13246-018-0651-x
Chandra, Shekhar S., Dowling, Jason A., Engstrom, Craig, Xia, Ying, Paproki, Anthony, Neubert, Aleš, Rivest-Hénault, David, Salvado, Olivier, Crozier, Stuart and Fripp, Jurgen (2018). A lightweight rapid application development framework for biomedical image analysis. Computer Methods and Programs in Biomedicine, 164, 193-205. doi: 10.1016/j.cmpb.2018.07.011
Roach, D., Jameson, M. G., Dowling, J. A., Ebert, M. A., Greer, P. B., Kennedy, A. M., Watt, S. and Holloway, L. C. (2018). Correlations between contouring similarity metrics and simulated treatment outcome for prostate radiotherapy. Physics in Medicine and Biology, 63 (3) 035001. doi: 10.1088/1361-6560/aaa50c
Koivula, Lauri, Kapanen, Mika, Seppälä, Tiina, Collan, Juhani, Dowling, Jason A., Greer, Peter B., Gustafsson, Christian, Gunnlaugsson, Adalsteinn, Olsson, Lars E., Wee, Leonard and Korhonen, Juha (2017). Intensity-based dual model method for generation of synthetic CT images from standard T2-weighted MR images – Generalized technique for four different MR scanners. Radiotherapy and Oncology, 125 (3), 411-419. doi: 10.1016/j.radonc.2017.10.011
Gulliford, S. L., Ghose, S., Ebert, M. A., Kennedy, A., Dowling, J., Mitra, J., Joseph, D. J. and Denham, J. W. (2017). Radiotherapy dose-distribution to the perirectal fat space (PRS) is related to gastrointestinal control-related complications. Clinical and Translational Radiation Oncology, 7, 62-70. doi: 10.1016/j.ctro.2017.10.002
Wyatt, Jonathan J., Dowling, Jason A., Kelly, Charles G., McKenna, Jill, Johnstone, Emily, Speight, Richard, Henry, Ann, Greer, Peter B. and McCallum, Hazel M. (2017). Investigating the generalisation of an atlas-based synthetic-CT algorithm to another centre and MR scanner for prostate MR-only radiotherapy. Physics in Medicine and Biology, 62 (24), N548-N560. doi: 10.1088/1361-6560/aa9676
Ghose, Soumya, Greer, Peter B., Sun, Jidi, Pichler, Peter, Rivest-Henault, David, Mitra, Jhimli, Richardson, Haylea, Wratten, Chris, Martin, Jarad, Arm, Jameen, Best, Leah and Dowling, Jason A. (2017). Regression and statistical shape model based substitute CT generation for MRI alone external beam radiation therapy from standard clinical MRI sequences. Physics in Medicine and Biology, 62 (22), 8566-8580. doi: 10.1088/1361-6560/aa9104
Ghose, Soumya, Dowling, Jason A., Rai, Robba and Liney, Gary P. (2017). Substitute CT generation from a single ultra short time echo MRI sequence: Preliminary study. Physics in Medicine and Biology, 62 (8), 2950-2960. doi: 10.1088/1361-6560/aa508a
Whelan, Brendan, Liney, Gary P., Dowling, Jason A., Rai, Robba, Holloway, Lois, McGarvie, Leigh, Feain, Ilana, Barton, Michael, Berry, Megan, Wilkins, Rob and Keall, Paul (2017). An MRI-compatible patient rotation system - Design, construction, and first organ deformation results. Medical Physics, 44 (2), 581-588. doi: 10.1002/mp.12065
Ghose, Soumya, Denham, James W., Ebert, Martin A., Kennedy, Angel, Mitra, Jhimli and Dowling, Jason A. (2016). Multi-atlas and unsupervised learning approach to perirectal space segmentation in CT images. Physical and Engineering Sciences in Medicine, 39 (4), 933-941. doi: 10.1007/s13246-016-0496-0
Chandra, Shekhar S., Dowling, Jason A., Greer, Peter B., Martin, Jarad, Wratten, Chris, Pichler, Peter, Fripp, Jurgen and Crozier, Stuart (2016). Fast automated segmentation of multiple objects via spatially weighted shape learning. Physics in Medicine and Biology, 61 (22), 8070-8084. doi: 10.1088/0031-9155/61/22/8070
Walker, Amy, Metcalfe, Peter, Liney, Gary, Batumalai, Vikneswary, Dundas, Kylie, Glide-Hurst, Carri, Delaney, Geoff P., Boxer, Miriam, Yap, Mei Ling, Dowling, Jason, Rivest-Henault, David, Pogson, Elise and Holloway, Lois (2016). MRI geometric distortion: Impact on tangential whole-breast IMRT. Journal of Applied Clinical Medical Physics, 17 (5), 7-19. doi: 10.1120/jacmp.v17i5.6242
Ghose, Soumya, Mitra, Jhimli, Rivest-Hénault, David, Fazlollahi, Amir, Stanwell, Peter, Pichler, Peter, Sun, Jidi, Fripp, Jurgen, Greer, Peter B. and Dowling, Jason A. (2016). MRI-alone radiation therapy planning for prostate cancer: Automatic fiducial marker detection. Medical Physics, 43 (5), 2218-2228. doi: 10.1118/1.4944871
Dowling, Jason A., Sun, Jidi, Pichler, Peter, Rivest-Hénault, David, Ghose, Soumya, Richardson, Haylea, Wratten, Chris, Martin, Jarad, Arm, Jameen, Best, Leah, Chandra, Shekhar S., Fripp, Jurgen, Menk, Frederick W. and Greer, Peter B. (2015). Automatic substitute computed tomography generation and contouring for magnetic resonance imaging (MRI)-alone external beam radiation therapy from standard MRI sequences. International Journal of Radiation Oncology Biology Physics, 93 (5), 1144-1153. doi: 10.1016/j.ijrobp.2015.08.045
Whelan, Brendan, Kumar, Shivani, Dowling, Jason, Begg, Jarrad, Lambert, Jonathan, Lim, Karen, Vinod, Shalini K., Greer, Peter B. and Holloway, Lois (2015). Utilising pseudo-CT data for dose calculation and plan optimization in adaptive radiotherapy. Australasian Physical and Engineering Sciences in Medicine, 38 (4), 561-568. doi: 10.1007/s13246-015-0376-z
Rivest-Hénault, David, Dowson, Nicholas, Greer, Peter B., Fripp, Jurgen and Dowling, Jason A. (2015). Robust inverse-consistent affine CT-MR registration in MRI-assisted and MRI-alone prostate radiation therapy. Medical Image Analysis, 23 (1), 56-69. doi: 10.1016/j.media.2015.04.014
Ghose, Soumya, Holloway, Lois, Lim, Karen, Chan, Philip, Veera, Jacqueline, Vinod, Shalini K., Liney, Gary, Greer, Peter B. and Dowling, Jason (2015). A review of segmentation and deformable registration methods applied to adaptive cervical cancer radiation therapy treatment planning. Artificial Intelligence in Medicine, 64 (2), 75-87. doi: 10.1016/j.artmed.2015.04.006
Sun, Jidi, Dowling, Jason, Pichler, Peter, Menk, Fred, Rivest-Henault, David, Lambert, Jonathan, Parker, Joel, Arm, Jameen, Best, Leah, Martin, Jarad, Denham, James W. and Greer, Peter B. (2015). MRI simulation: End-to-end testing for prostate radiation therapy using geometric pelvic MRI phantoms. Physics in Medicine and Biology, 60 (8) 3097, 3097-3109. doi: 10.1088/0031-9155/60/8/3097
Walker, Amy, Liney, Gary, Holloway, Lois, Dowling, Jason, Rivest-Henault, David and Metcalfe, Peter (2015). Continuous table acquisition MRI for radiotherapy treatment planning: Distortion assessment with a new extended 3D volumetric phantom. Medical Physics, 42 (4), 1982-1991. doi: 10.1118/1.4915920
Sun, Jidi, Barnes, Michael, Dowling, Jason, Menk, Fred, Stanwell, Peter and Greer, Peter B. (2015). An open source automatic quality assurance (OSAQA) tool for the ACR MRI phantom. Australasian Physical and Engineering Sciences in Medicine, 38 (1), 39-46. doi: 10.1007/s13246-014-0311-8
Sun, Jidi, Dowling, Jason A., Pichler, Peter, Parker, Joel, Martin, Jarad, Stanwell, Peter, Arm, Jameen, Menk, Fred and Greer, Peter B. (2015). Investigation on the performance of dedicated radiotherapy positioning devices for MR scanning for prostate planning. Journal of Applied Clinical Medical Physics, 16 (2), 4-13. doi: 10.1120/jacmp.v16i2.4848
Sun, J., Pichler, P., Dowling, J., Menk, F., Stanwell, P., Arm, J. and Greer, P. B. (2014). MR simulation for prostate radiation therapy: Effect of coil mounting position on image quality. British Journal of Radiology, 87 (1042) 20140325, 20140325. doi: 10.1259/bjr.20140325
Litjens, Geert, Toth, Robert, van de Ven, Wendy, Hoeks, Caroline, Kerkstra, Sjoerd, van Ginneken, Bram, Vincent, Graham, Guillard, Gwenael, Birbeck, Neil, Zhang, Jindang, Strand, Robin, Malmberg, Filip, Ou, Yangming, Davatzikos, Christos, Kirschner, Matthias, Jung, Florian, Yuan, Jing, Qiu, Wu, Gao, Qinquan, Edwards, Philip Eddie, Maan, Bianca, van der Heijden, Ferdinand, Ghose, Soumya, Mitra, Jhimli, Dowling, Jason, Barratt, Dean, Huisman, Henkjan and Madabhushi, Anant (2014). Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. Medical Image Analysis, 18 (2), 359-373. doi: 10.1016/j.media.2013.12.002
Dowling, Jason A. (2014). Opportunities for image analysis in radiation oncology. Australasian Physical and Engineering Sciences in Medicine, 37 (2), 275-277. doi: 10.1007/s13246-014-0278-5
Jameson, Michael G., De Leon, Jeremiah, Windsor, Apsara A., Cloak, Kirrily, Keats, Sarah, Dowling, Jason A, Chandra, Shekhar S., Vial, Philip, Sidhom, Mark, Holloway, Lois and Metcalfe, Peter (2013). Endorectal balloons in the post prostatectomy setting: Do gains in stability lead to more predictable dosimetry?. Radiotherapy and Oncology, 109 (3), 493-497. doi: 10.1016/j.radonc.2013.08.024
Chandra, Shekhar S., Dowling, Jason A., Shen, Kai-Kai, Raniga, Parnesh, Pluim, Josien P. W., Greer, Peter B., Salvado, Olivier and Fripp, Jurgen (2012). Patient specific prostate segmentation in 3-D magnetic resonance images. IEEE Transactions On Medical Imaging, 31 (10) 6257497, 1955-1964. doi: 10.1109/TMI.2012.2211377
Dowling, Jason A., Lambert, Jonathan, Parker, Joel, Salvado, Olivier, Fripp, Jurgen, Capp, Anne, Wratten, Chris, Denham, James W. and Greer, Peter B. (2012). An atlas-based electron density mapping method for magnetic resonance imaging (MRI)-alone treatment planning and adaptive MRI-based prostate radiation therapy. International Journal of Radiation: Oncology - Biology - Physics, 83 (1), E5-E11. doi: 10.1016/j.ijrobp.2011.11.056
Lambert, Jonathan, Greer, Peter B., Menk, Fred, Patterson, Jackie, Parker, Joel, Dahl, Kara, Gupta, Sanjiv, Capp, Anne, Wratten, Chris, Tang, Colin, Kumar, Mahesh, Dowling, Jason, Hauville, Sarah, Hughes, Cynthia, Fisher, Kristen, Lau, Peter, Denham, James W. and Salvado, Olivier (2011). MRI-guided prostate radiation therapy planning: Investigation of dosimetric accuracy of MRI-based dose planning. Radiotherapy and Oncology, 98 (3), 330-334. doi: 10.1016/j.radonc.2011.01.012
Greer, Peter B., Dowling, Jason A., Lambert, Jonathon A., Fripp, Jurgen, Parker, Joel, Denham, James W., Wratten, Chris, Capp, Anne and Salvado, Olivier (2011). A magnetic resonance imaging-based workflow for planning radiation therapy for prostate cancer. Medical Journal of Australia, 194 (4), S24-S27. doi: 10.5694/j.1326-5377.2011.tb02939.x
Madabhushi, Anant, Dowling, Jason, Yan, Pingkun, Fenster, Aaron, Abolmaesumi, Purang and Hata, Nobuhiko (2010). Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 6367 LNCS.
Sahyun, M. R.V., Adams, H., Arney, J. S., Baetzold, R., Bearss, J., Belson, J., Benwood, B., Bi, Y., Braun, G., Buettner, A. V., Calabria, A., Calvert, R., Chang, T. C., Chatterjee, A., Chen, S., Cobene, R. L., Damera-Venkata, N., Deardruff, L., Delametter, C., Dowling, J., Feng, X. F., Gale, L., Ganapathiappan, S., Gissen, D., Graczyk, T., Gissen, D., Graczyk, T., Hall, D., Herron, S. ... Young, R. (2006). Journal of Imaging Science and Technology: From the editor. Journal of Imaging Science and Technology, 50 (6). doi: 10.2352/J.ImagingSci.Technol.(2006)50:6(iii)
Dowling, Jason (2005). Artificial human vision. Expert Review of Medical Devices, 2 (1), 73-85. doi: 10.1586/17434440.2.1.73
Conference Papers
Chlap, Phillip, Min, Hollie, Sidhom, Mark, Martin, Jarad, Whitehead, Angela, Moore, Alisha, Dowling, Jason, Haworth, Annette, Ebert, Martin A., Vinod, Shalini K. and Holloway, Lois (2024). Automated contour quality assurance: Implementation and impact in the TROG18.01 NINJA Clinical Trial. ESTRO meets Asia 2024, Kuala Lumpur, Malaysia, 23-25 August 2024. Amsterdam, Netherlands: Elsevier. doi: 10.1016/s0167-8140(24)01927-3
Liu, Siyu, Dowling, Jason A., Engstrom, Craig, Greer, Peter B., Crozier, Stuart and Chandra, Shekhar S. (2023). Manipulating medical image translation with manifold disentanglement. 2023 International Conference on Digital Image Computing: Techniques and Applications (DICTA), Port Macquarie, Australia, 28 November-1 December 2023. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/dicta60407.2023.00053
Antico, Maria, Moafa, Khalid, Vukovic, Damjan, Edwards, Christopher, Dowling, Jason, Canty, David, Steffens, Marian and Fontanarosa, Davide (2023). Innovative AI techniques to aid clinical diagnosis of complex lung pathologies in ultrasound images. Acoustics 2023 Sydney, Sydney, NSW Australia, 4-8 December 2023. Melville, NY United States: AIP Publishing. doi: 10.1121/10.0023344
Antico, Maria, Gillman, Ashley, Belous, Gregg, Lebrat, Leo, Petersson, Lars, Schmutz, Beat, Mejan-Fripp, Jurgen, Dowling, Jason and Fontanarosa, Davide (2023). Real-time 3-D reconstruction from multiple simultaneous ultrasound scans for enhanced imaging. Acoustics 2023 Sydney, Sydney, NSW Australia, 4-8 December 2023. Melville, NY United States: AIP Publishing. doi: 10.1121/10.0023047
Leung, Sze-Nung, Dowling, Jason A., Fripp, Jurgen, Shen, Kai-Kai and Chandra, Shekhar S. (2023). Medical shape pattern analysis with MeshCNN. 20th IEEE International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia, 18-21 April 2023. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/isbi53787.2023.10230427
Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2023). e-Health CSIRO at RadSum23: adapting a chest x-ray report generator to multimodal radiology report summarisation. 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP 2023, Toronto, Canada, 13 July 2023. Stroudsburg, PA United States: Association for Computational Linguistics. doi: 10.18653/v1/2023.bionlp-1.56
Lekieffre, P., Collot, E., Texier, B., Hémon, C., Tahri, S., Chourak, H., Bessieres, I., Greer, P., Dowling, J., Barateau, A., Lafond, C., de Crevoisier, R. and Nunes, J. (2023). 3D patch cycle-GAN-based MR-to-CT synthesis from monocenter and multicenter training. ESTRO 2023, Vienna, Austria, 13 - 16 May 2023. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(23)66586-7
Texier, B., Hémon, C., Collot, E., Lekieffre, P., Tahri, S., Chourak, H., Greer, P., Dowling, J., Barateau, A., Lafond, C., de Crevoisier, R., Castelli, J. and Nunes, J. (2023). Evaluation of prostate synthetic CTs from MRI using 2D cycle-GAN with multicentric learning. ESTRO 2023, Vienna, Austria, 13 - 16 May 2023. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(23)08618-8
White, J., Wadhawan, A., Min, H., Rabi, Y., Schmutz, B., Dowling, J., Tchernegovski, A., Bourgeat, P., Tetsworth, K., Fripp, J., Mitchell, G., Hacking, C., Williamson, F. and Schuetz, M. (2023). Distal radius fracture classification using deep learning algorithms. The New Zealand Orthopaedic Association and the Australian Orthopaedic Association (NZOA AOA) Combined Annual Scientific Meeting, Christchurch, New Zealand, 31 October – 3 November 2022. London, United Kingdom: British Editorial Society of Bone and Joint Surgery. doi: 10.1302/1358-992x.2023.2.102
Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2023). A concise model for medical image captioning. CLEF 2023: Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, 18-21 September 2023. CEUR-WS.
Xin, Bowen, Min, Hang, Gillman, Ashley G., Koopman, Bevan, Dowling, Jason and Nicolson, Aaron (2022). CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D deep learning detection network approach. CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, 5-8 September 2022. Aachen, Germany: Rheinisch-Westfaelische Technische Hochschule Aachen Lehrstuhl Informatik.
Lebrat, Leo, Nicolson, Aaron, Santa Cruz, Rodrigo, Belous, Gregg, Koopman, Bevan and Dowling, Jason (2022). CSIRO at ImageCLEFmedical Caption 2022. CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, 5-8 September 2022. Aachen, Germany: Rheinisch-Westfaelische Technische Hochschule Aachen Lehrstuhl Informatik.
Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2022). ImageCLEF 2021 Best of Labs: The curious case of caption generation for medical images. 13th International Conference of the CLEF Association, Bologna, Italy, 5-8 September 2022. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-031-13643-6_15
Finnegan, R., Reynolds, H. M., Sun, Y., Ebert, M. A., Holloway, L., Sykes, J., Dowling, J. and Haworth, A. (2021). a probabilistic biological atlas for prostate cancer. Annual Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), Electr Network, Aug 28-31, 2021. CLARE: ELSEVIER IRELAND LTD.
Otton, J., Finnegan, R. and Dowling, J. (2021). Quantification Of Cardiac Chamber Size From Chest CT: Application To COVID19. 16th Annual Scientific Meeting of the Society of Cardiovascular Computed Tomography, Online, 16 - 17 July 2021. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.jcct.2021.06.216
Chourak, Hilda, Barateau, Anais, Mylona, Eugenia, Cadin, Capucine, Lafond, Caroline, Greer, Peter, Dowling, Jason, Jean-Claude-Nunes, , Crevoisier, Renaud de and Acosta, Oscar (2021). Voxel-wise analysis for spatial characterisation of pseudo-CT errors in MRI-only radiotherapy planning. IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 13-16 April 2021. Piscataway, NJ, United States: IEEE. doi: 10.1109/isbi48211.2021.9433800
Cruz, Rodrigo Santa, Lebrat, Leo, Bourgeat, Pierrick, Dore, Vincent, Dowling, Jason, Fripp, Jurgen, Fookes, Clinton and Salvado, Olivier (2021). Going Deeper With Brain Morphometry Using Neural Networks. 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 13-16 April 2021. Piscataway, NJ United States: IEEE. doi: 10.1109/isbi48211.2021.9434039
Otton, J., Finnegan, R. and Dowling, J. (2021). Automated Cardiac Evaluation From Chest CT: Potential Role in COVID-19. 69th CSANZ Annual Scientific Meeting 45th Annual Scientific Meeting of the International Society for Heart Research ANZET 21, Online, 2021. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.hlc.2021.06.186
Tonina, Tommaso, Alshehhi, Hamda, Dowling, Jason, Jamanca-Lino, Gustavo, Kennedy, Erin, Kucher, Yelyzaveta, Rijin, K. V. and Norber, Itai (2021). Advanced propulsion as a cornerstone for space exploration and interstellar living. International Astronautical Congress, IAC, Dubai, United Arab Emirates, 25-29 October 2021. Paris, France: International Astronautical Federation, IAF.
Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2021). AEHRC CSIRO at ImageCLEFmed caption 2021. CLEF 2021: Conference and Labs of the Evaluation Forum, Bucharest, Romania, 21-24 September 2021. Aachen, Germany: Rheinisch-Westfaelische Technische Hochschule Aachen.
Choi, J., Lee, D., Dowling, J., OConnor, L., Pichler, P. and Greer, P. (2019). Bulk Anatomical Density Maps for Quality Assurance in MRI-Only Prostate Treatment Planning. Annual Meeting of the American-Association-of-Physicists-in-Medicine (AAPM), San Antonio Tx, Jul 14-18, 2019. HOBOKEN: WILEY.
Marcello, M., Kennedy, A., Haworth, A., Holloway, L., Dowling, J., Greer, P., Gulliford, S., Dearnaley, D., Sydes, M., Hall, E., Denham, J. and Ebert, M. (2019). External Validation of 3D Spatial Dose-Response Mapping for Toxicity Subsequent to Pelvic Radiotherapy. Annual Meeting of the American-Association-of-Physicists-in-Medicine (AAPM), San Antonio Tx, Jul 14-18, 2019. HOBOKEN: WILEY.
Finnegan, R., Lorenzen, E., Dowling, J., Holloway, L., Thwaites, D. and Brink, C. (2019). Dosimetric Validation of Automatic Cardiac and Coronary Artery Segmentation in Breast Radiotherapy. 61st Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), San Antonio Tx, Jul 14-18, 2019. HOBOKEN: WILEY.
Finnegan, R., Dowling, J., Brink, C., Thwaites, D., Lorenzen, E. and Holloway, L. (2019). Uncertainty in Segmentation: Application to Iterative Atlas Selection. 61st Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), San Antonio Tx, Jul 14-18, 2019. HOBOKEN: WILEY.
Largent, Axel, Nunes, Jean-Claude, Saint-Jalmes, Herve, Baxter, John, Greer, Peter, Dowling, Jason, Crevoisier, Renaud De and Acosta, Oscar (2019). Pseudo-CT generation for mri-only radiotherapy: comparative study between a generative adversarial network, a u-net network, a patch-based, and an atlas based methods. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, 8-11 April 2019. New York, NY USA: IEEE Computer Society. doi: 10.1109/ISBI.2019.8759278
Arabi, Hossein, Dowling, Jason A., Burgos, Ninon, Han, Xiao, Greer, Peter B., Koutsouvelis, Nikolaos and Zaidi, Habib (2018). Comparison of synthetic CT generation algorithms for MRI-only radiation planning in the pelvic region. 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), Sydney, NSW Australia, 10-17 November 2018. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/NSSMIC.2018.8824321
Marcello, M., Kennedy, A., Dowling, J., Haworth, A., Holloway, L., Gulliford, S., Dearnaley, D., Denham, J. and Ebert, M. (2018). Spatial, Anatomically-Localized Mapping of Dose-Toxicity Associations Following Prostate Radiotherapy. 60th Annual Meeting of the American-Association-of-Physicists-in-Medicine, Nashville Tn, Jul 29-Aug 02, 2018. HOBOKEN: WILEY.
Roach, D., Ebert, M.A., Jameson, M., Dowling, J.A., Kennedy, A., Greer, P. and Holloway, L. (2018). Inter-observer contouring variation of multiple pelvic structures on CT and MR for prostate cancer. ESTRO 37 - European Society for Radiotherapy & Oncology, Barcelona, Spain, 21-23 April 2018. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(18)31923-6
Roach, D., Dowling, J. A., Kennedy, A., Jameson, M., Greer, P., Ebert, M. and Holloway, L. (2018). Can contouring probability maps be a predictor for prostate cancer treatment outcome and toxicity?. 37th Annual Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), Barcelona Spain, Apr 20-24, 2018. CLARE: ELSEVIER IRELAND LTD. doi: 10.1016/S0167-8140(18)32459-9
Largent, Axel, Nunes, Jean-Claude, Saint-Jalmes, Hervé, Simon, Antoine, Perichon, Nicolas, Barateau, Anais, Hervé, Chloé, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., De Crevoisier, Renaud and Acosta, Oscar (2017). Pseudo-CT generation by conditional inference random forest for MRI-based radiotherapy treatment planning. European Signal Processing Conference (EUSIPCO), Kos, Greece, 28 August - 2 September 2017. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.23919/EUSIPCO.2017.8081166
Koivula, L., Wee, L., Dowling, J., Greer, P., Seppälä, T. and Korhonen, J. (2017). Intensity based synthetic CT generation from standard T2-weighted MR images with three MR scanners. ESTRO 36 - European Society for Radiotherapy & Oncology, Vienna, Austria, 5-9 May 2017. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(17)30884-8
Bell, L. R., Dowling, J. A., Pogson, E. M., Metcalfe, P. and Holloway, L. (2017). Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast. Micro-Mini & Nano-Dosimetry & Innovative Technologies in Radiation Therapy (MMND&ITRO2016), Hobart, TAS Australia, 26–28 January 2016. Bristol, United Kingdom: Institute of Physics. doi: 10.1088/1742-6596/777/1/012002
Dowling, J. A., Burdett, N., Greer, P. B., Sun, J., Parker, J., Pichler, P., Stanwell, P., Chandra, S., Rivest-Henault, D., Ghose, S., Salvado, O. and Fripp, J. (2014). Automatic atlas based electron density and structure contouring for MRI-based prostate radiation therapy on the cloud. XVII International Conference on the Use of Computers in Radiation Therapy, Melbourne, Australia, 6–9 May 2013. Bristol, United Kingdom: Institute of Physics Publishing. doi: 10.1088/1742-6596/489/1/012048
Rivest-Hénault, David, Dowson, Nicholas, Greer, Peter and Dowling, Jason (2014). Inverse-consistent rigid registration of CT and MR for MR-based planning and adaptive prostate radiation therapy. 17th International Conference on the Use of Computers in Radiation Therapy (ICCR), Melbourne Australia, May 06-09, 2013. BRISTOL: Institute of Physics Publishing. doi: 10.1088/1742-6596/489/1/012039
Rivest-Hénault, David, Greer, Peter, Fripp, Jurgen and Dowling, Jason (2014). Structure-guided nonrigid registration of CT-MR pelvis scans with large deformations in MR-based image guided radiation therapy. Springer Verlag. doi: 10.1007/978-3-319-05666-1_9
Dowling, Jason, Dang, K., Fox, Chris D., Chandra, S., Gill, Suki, Kron, T., D Pham, D. and Foroudi, F. (2014). Fast cine-magnetic resonance imaging point tracking for prostate cancer radiation therapy planning. ICCR 2013: XVII International Conference on the Use of Computers in Radiation Therapy, Melbourme, VIC, Australia, 6–9 May 2013. Bristol, United Kingdom: Institute of Physics Publishing. doi: 10.1088/1742-6596/489/1/012027
Ghose, Soumya, Holloway, Lois, Lim, Karen, Chan, Philip, Veera, Jacqueline, Vinod, Shalini K., Liney, Gary, Greer, Peter B. and Dowling, Jason (2013). A survey of cervix segmentation methods in magnetic resonance images. doi: 10.1007/978-3-642-41083-3_32
Ghose, Soumya, Denham, Jim, Ebert, Martin, Kennedy, Angel, Mitra, Jhimli, Rose, Stephen and Dowling, Jason (2013). Multi-atlas and Gaussian Mixture Modeling Based Perirectal Fat Segmentation from CT Images. 5th International Workshop on Abdominal Imaging - Computational and Clinical Applications, Nagoya, Japan, 22 September 2013. New York, NY, United States: Springer. doi: 10.1007/978-3-642-41083-3_22
Dimigen, M., Vinod, S., Borok, N., Holloway, L., Dowling, J. and Lim, K. (2012). The use of cervical cancer MRI contouring guidelines in clinical practice. 54th Annual Meeting of the American Society for Radiation Oncology, Boston, MA, United States, 28 - 31 October 2012. Elsevier BV. doi: 10.1016/j.ijrobp.2012.07.1147
Whelan, B., Kumar, S., Dowling, J., Lambert, J., Lim, K., Salvado, O., Begg, J., Greer, P., Vinod, S. and Holloway, L. (2012). Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning. 54th Annual Meeting and Exhibition of the American Association of Physicists in Medicine (AAPM), Charlotte, NC, United States, 29July-02 August 2012. College Park, MD, United States: American Association of Physicists in Medicine. doi: 10.1118/1.4735020
Dowling, Jason A., Fripp, Jurgen, Chandra, Shekhar, Pluim, Josien P. W., Lambert, Jonathan, Parker, Joel, Denham, James, Greer, Peter B. and Salvado, Olivier (2011). Fast automatic multi-atlas segmentation of the prostate from 3D MR images. 14th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011), Toronto, Canada, 18-22 September 2011. Heidelberg, Germany: Springer. doi: 10.1007/978-3-642-23944-1_2
Chandra, Shekhar, Dowling, Jason, Shen, Kaikai, Pluim, Josien, Greer, Peter, Salvado, Olivier and Fripp, Jurgen (2011). Automatic segmentation of the prostate in 3D magnetic resonance images using case specific deformable models. International Conference on Digital Image Computing: Techniques and Applications, DICTA 2011, Noosa Heads, Qld., Australia, 6-8 December 2011. Piscataway, NJ, United States: I E E E. doi: 10.1109/DICTA.2011.10
Lambert, J., Dowling, J., Menk, F., Parker, J., Capp, A., Denham, J., Salvado, O. and Greer, P. B. (2011). SU‐D‐110‐05: MR‐Based Dose Calculation for Prostate Radiotherapy Using Atlas‐ Based Auto‐Segmentation. doi: 10.1118/1.3611541
Acosta, Oscar, Dowling, Jason, Cazoulat, Guillaume, Simon, Antoine, Salvado, Olivier, de Crevoisier, Renaud and Haigron, Pascal (2010). Atlas based segmentation and mapping of organs at risk from planning CT for the development of voxel-wise predictive models of toxicity in prostate radiotherapy. MICCAI 2010: The 13th International Conference on Medical Image Computing and Computer-Assisted Intervention. F-W8: International Workshop on Prostate Cancer Imaging, Beijing, China, 24 September 2010. Heidelberg, Germany: Springer. doi: 10.1007/978-3-642-15989-3_6
Dowling, Jason, Lambert, Jonathan, Parker, Joel, Greer, Peter B., Fripp, Jurgen, Denham, James, Ourselin, Sebastien and Salvado, Olivier (2010). Automatic MRI atlas-based external beam radiation therapy treatment planning for prostate cancer. International Workshop on Prostate Cancer Imaging: Computer-Aided Diagnosis, Prognosis, and Intervention Held in Conjunction with MICCAI 2010, Beijing, China, 22-24 September 2010. Heidelberg, Germany: Springer. doi: 10.1007/978-3-642-15989-3_4
Dowling, J. (2009). Current and future prospects for optoelectronic retinal prostheses. Nature Publishing Group. doi: 10.1038/eye.2008.385
Maeder, Anthony, Dowling, Jason, Nguyen, Anthony, Brunton, Emma and Nguyen, Phuong (2008). Assuring authenticity of digital mammograms by image watermarking. doi: 10.1007/978-3-540-70538-3_29
Dowling, Jason, Planitz, Birgit M., Maeder, Anthony J., Du, Jiang, Pham, Binh, Boyd, Colin, Chen, Shaokang, Bradley, Andrew P. and Crozier, Stuart (2008). A comparison of DCT and DWT block based watermarking on medical image quality. 6th International Workshop on Digital Watermarking, Guangzhou, China, 3-5 December 2007. Heidelberg, Germany: Springer. doi: 10.1007/978-3-540-92238-4_35
Dowling, Jason A., Planitz, Birgit M., Maeder, Anthony J., Du, Jiang Du, Pham, Binh, Boyd, Colin, Chen, Shaokang, Bradley, Andrew P. and Crozier, Stuart (2007). Visual quality assessment of watermarked medical images. Medical Imaging 2007: Image Perception, Observer Performance, and Technology Assessment, San Diego, USA, 21-22 February 2007. Bellingham, Wash., U.S.A.: SPIE - International Society for Optical Engineering. doi: 10.1117/12.707571
Dowling, Jason, Boles, Wageeh and Maeder, Anthony (2006). A display framework for presenting information from a visual prosthesis. Mechatronics and Machine Vision in Practice.
Dowling, J., Boles, W. and Maeder, A. (2006). Mobility assessment using simulated Arti.cial Human Vision. 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Workshops, San Diego, CA USA, 21-23 September 2005. Piscataway, NJ USA: Institute of Electrical and Electronics Engineers. doi: 10.1109/cvpr.2005.494
Dowling, Jason, Boles, Wageeh and Maeder, Anthony (2006). Simulated artificial human vision: The effects of spatial resolution and frame rate on mobility. 4th International Conference on Active Media Technology, Brisbane Australia, Jun 07-09, 2006. AMSTERDAM: IOS PRESS.